96 subregions in the rat brain atlas. 4 - 3. Oct 22, 2013 · The Rat Brain in Stereotaxic Coordinates provides an atlas of the rat brain. Sep 1, 2018 · Here, the left and right brain were the unpartitioned regions in the respective part of rat atlas. Relying on our prior TPMs and template, we can automatically and efficiently extract brain tissue data. 016 mm 3) (Johnson et al. txt) or view presentation slides online. Atlas of the Postnatal Rat Brain in Stereotaxic Coordinates. Diffusion weighted images, and associated scalar images were acquired of a single specimen with a fully sampled Fourier reconstruction, 61 angles and b=3000 s/mm 2 yielding 50 um Feb 1, 2007 · neuroimaging data and atlas space for the mouse and rat brain, we have. Secondly, the comprehensive set of MRI/DTI contrasts provided has enabled the authors to identify Nov 24, 2004 · The preceding editions made The Rat Brain in Stereotaxic Coordinates the second most cited book in science. His current research is focused on the comparative anatomy of the hippocampus and the claustrum. next generation brain maps and brain atlases. MRI/DTI Atlas of the Rat Brain offers two major enhancements when compared with earlier attempts to make MRI/DTI rat brain atlases. The mouse brain in stereotaxic coordinates: hard cover edition. We have completely revised the identification of brain structures in order to produce an atlas that will be useful beyond the end of this century. ISBN 9780128189597, 9780323991858, 9780128189634. Continued technical developments have led to MR atlases with isotropic spatial resolution of 25 um; i. An automated procedure, as an SPM toolbox, was introduced for spatially normalizing individual rat brains, conducting statistical analysis and visually localizing the results in the Atlas coordinate space. Brain areas are shown in coronal, sagittal, and horizontal planes. Creator: Neural Systems Laboratory, University of Oslo. We would like to thank Wynne Schiffer for providing the data and helping with the integrations. Nov 1, 2007 · The 3-D rat brain atlas currently includes 60 structures, while 30 structures have been incorporated in the 3-D mouse brain atlas. Here you can browse and download our anatomical mole-rat brain atlas. , voxels that are more than 1,000 times smaller ( Johnson Researchers with a need to understand the detailed organization of the rat brain as well as structure/function relationships will need this atlas and its array of stains. We describe a multi-contrast, multi-dimensional atlas of the Wistar rat acquired at microscopic spatial resolution using magnetic resonance histology (MRH). He was awarded the degree of Doctor of Science by the University of Sydney in 2012 and received the Distinguished Achievement Award of the Australasian Society for Neuroscience in Atlas Source: Paxinos, George, and Keith B. We have acquired a microscopic resolution isotropic MRI and DTI atlasing template for the Sprague Dawley rat brain with The Paxinos Watson rat brain atlas has been cited over 80,000 times. The main features of this atlas are: (1) It is based on the flat-skull position, and bregma, lambda, or the midpoint of the interaural line can be used as a reference point. Smoothed version of the Kim et al. Title: Waxholm Space Atlas of Rat Brain (v3) Publisher: IT'IS Foundation (WHS-SD atlas registered to NeuroRat V4-0) Release Date: 16. Dec 12, 2017 · For all remaining samples, RNA-Seq reads from rat and mouse samples were aligned to the rat and mouse genomes respectively using the STAR Aligner v2. EBRAINS provides a visualization interface, enabling researchers to explore and compare different aspects of the rat brain in 3D space. 2 : Thalamic, striatopallidal and midbrain dopaminergic structures of the WHS rat brain atlas. 5. org, launched in May 2005, is an interactive, multiresolution next-generation brain atlas that is based on over 140 million megapixels of sub-micron resolution, annotated, scanned images of serial sections of both primate and non-primate brains and that is integrated with a high-speed database for querying and retrieving data about brain Download scientific diagram | Coronal rat brain atlas diagrams from Paxinos and Watson (1998) corresponding to the middle of each 2 mm phMRI slice and indicating the ROIs evaluated in this study If your work makes use of previous atlas version, or brain region descriptions detailed in earlier publications, please also cite the corresponding publication: Papp EA, Leergaard TB, Calabrese E, Johnson GA, Bjaalie JG (2014) Waxholm Space atlas of the Sprague Dawley rat brain. Mar 1, 2015 · Introduction. Download : Download high-res image (525KB) Download : Download full-size image; Fig. Nov 1, 2017 · By contrast, the conventional two-dimensional atlases of the rat brain are the most widely used, such as the Paxinos and Watson rat brain atlas [14], [15]. The first edition of Brain maps: structure of the rat brain was pub-lished in 1992 and had four unique features: it was the first computer graphics, digital brain atlas (designed in Adobe Illustrator; see Swanson, Mar 21, 2023 · Overview of methodology and historical context. , Neuroimage 97:374–86, 2014) is an open access, three-dimensional reference atlas defined in an ex-vivo magnetic Atlas Source: Paxinos, George, and Charles Watson. Waxholm Space Atlas. 2a 11 with their corresponding Ensembl 84 The series of atlases of the developing rat brain in stereotaxic coordinates that we propose here has been conceived as a tool for the exploration of the rat brain in vivo during the postnatal period, offering a choice of bregma and lambda as the reference points. 2 mm slices, with a planar resolution of 50 µm. Dec 26, 2017 · Two panels showing bilateral views of Atlas Level 35 selected from the corresponding file in Rat brain atlas Complete 4. May 28, 2015 · The comprehensive set of MRI/DTI contrasts provided has enabled the authors to identify more than 80% of structures identified in The Rat Brain in Stereotaxic Coordinates. The probability maps of all the considered tracts are overlaid on the Karolinska rat brain template at some representative axial levels, showed as blue lines in the mid-sagittal sections on the right. 02. 0) eMail*. The SIGMA resources offer to the preclinical neuroimaging community a complete set of in vivo and ex vivo templates, tissues priors as well as functional and anatomical atlases of the rat brain. In 2011, the reference atlas was updated to enable interactive online exploration of the atlas and to provide a deeper level of 3-D annotation for informatics Cerebrovascular Disease (stroke or "brain attack"): NEW: Multiple embolic infarction, diffusion and FLAIR imaging. Features of the Compact Third Edition The BAMS Rat Connectome Project (2009) BAMS Rat Connectome Project is a purely curational project, with the long-term goal of assembling the most accurate and reliable connection matrix possible of the rat nervous system from the primary experimental literature. The foundation of this approach is discussed by Bota and Swanson (2007). 2 to 2. , 1987). 2017-10: New 3d viewer: in addition to the wholebrain surface viewer, a per-region mesh viewer is under way. 1 to 9. The atlas constitutes of 65 equidistant axial slices Our focus on neuroscience began with the launch of the Allen Institute for Brain Science in 2003, which led to the creation of the widely-used Allen Brain Atlases. Purchase The Rat Brain in Stereotaxic Coordinates - 6th Edition. Access Online via Elsevier, 2001. Below, we discuss its key features regarding terminology, structural organization, and annotations of the atlas, before exemplifying how it can be utilized for Feb 8, 2019 · 2018-06: Visualize your own data inside a brain atlas with SBA Composer. (2) The atlas is based on the study of 130 adult male Wistar rats (with a weight range of 270 Download scientific diagram | A diagrammatic representation based on the rat brain atlas of Paxinos and Watson (1997) indicating injections sites of vehicle or CoCl 2 (closed circle) into the This atlas is based on the study of 130 adult male Wistar rats (with a weight range of 270-310 g). Compare different brain regions and visualize the projection patterns. Neuroimage 32 , 538–550 (2006). The Rat Atlas is a three dimensional (3D) computerized map of rat brain anatomy created with digital imaging techniques. The structures included are the outer boundaries of the brain and areas, zones and nuclei of the cerebral cortex, hippocampus, basal ganglia, thalamus, amygdala, as well as major fiber tracts (Figures 2 A, 2 C, 2 E Jun 11, 2019 · SIGMA Rat Brain Templates and Atlases. , January 2013: The Custom Reconstruction Wizard now supports STL (STereoLithography) file format, December 2012: Rat Brain Atlas - Free ebook download as PDF File (. Rat Atlas. Introduction to RGD Disease Portals. The Timm-Nissl atlas is based on a historical collection of rat brain sections stained with Haug’s version 43 of Timm’s method 40, in the Explore the mouse brain connectivity in 3D with this interactive tool. Using the SIGMA anatomical template as a reference, we registered two MRI compatible atlases (Tohoku and Waxholm) of the rat brain into a common space. atlas ava ilable, covering all major systems of the brain with detailed delineations. 1. Enhanced and Unified Mouse Brain Atlas at 10, 25, 50 and 100 micron resolutions. Each atlas contains a series of microphotographs of wet, non-stained 200 micron Jan 11, 2023 · The Waxholm S pace (W HS) rat brain a tlas is the most compre hensive open acce ss volumetr ic rat brain. Apr 1, 2015 · Download : Download high-res image (1MB) Download : Download full-size image Fig. J. Jan 1, 2005 · The atlas is freely distributed and potentially useful for several purposes, including automated and manual delineation of rat brain structural and functional imaging data. 5 : The content and creation of the WHS atlas of the Sprague Dawley rat brain version 4. This division is in a 16-year phase focused on multimodal characterization of brain cell types. MRI Atlas of the Infant Rat Brain: Brain Segmentation features an entirely new coronal, sagittal and horizontal set of tissue cut in regular 9 µm intervals with accompanying photographs of MRI data and color drawings of selected brain regions in the three planes. Print Book & E-Book & E-Book. Beginning with the first edition (Swanson, 1992), the brain atlas has been based on the same set of transverse histological sections and accompanying set of photographic templates. , 2015) superimposed onto the thionine section shows Feb 16, 2021 · Waxholm Space Atlas of Rat Brain. The atlas is a 60 μm isotropic image volume composed of 256 coronal slices with 71 manually delineated structures and substructures. Beta version. We have also taken this opportunity to release the atlas in a compact form and to follow this with a com-prehensive fourth edition (planned for 1997). For the analysis of rat brain data the VOI atlas Rat_W. 1 mm posterior to Bregma; ML: 1. Subacute stroke: hesitating speech, "transcortical aphasia". Abbreviations in italics below correspond to abbreviations used in the Paxinos rat brain The Allen Mouse Brain Atlas includes a full-color, high-resolution anatomic reference atlas accompanied by a systematic, hierarchically organized taxonomy of mouse brain structures. pdf), Text File (. Furthermore, dye calibration surgery was performed in P7–P13 infant rats by injecting Methylene blue, and sections were incubated in Nissl solutions. The Rat Genome Database houses genomic, genetic, functional, physiological, pathway and disease data for the laboratory rat as well as comparative data for mouse and human. Here we present an update of the Waxholm Space rat brain atlas, a comprehensive open-access Mar 22, 2022 · However, these tools are not applicable to the rat brain based on the default parameters (Lohmeier et al. The atlas constitutes of 65 equidistant axial slices Download scientific diagram | Examples of rat brain regions included in the 3-D rat brain atlas. This atlas has been adopted However, progress has been made by introducing the SIGMA rat brain templates and atlases (Barrière et al. George Paxinos, Charles Watson. These MR images were used to form an ‘average’ rat brain, which was then combined with an Nov 1, 2004 · The position of the dmPAG on the skull was determined according to the Paxinos rat brain atlas (AP: 0 mm; L: ±1. The site also hosts data mining and analysis tools for rat genomics and physiology. Nov 7, 2019 · For the mouse, the most widely used animal model to understand the mammalian brain, a variety of printed and/or digital atlases exist with varying levels of segmentations in 2D or 3D images Feb 8, 2023 · The Waxholm Space (WHS) rat brain atlas is the most comprehensive open access volumetric rat brain atlas available, covering all major systems of the brain with detailed delineations. Download Free PDF. “The Nature Methods publication marks a significant milestone, making this highly advanced brain atlas available to the scientific community in its most refined form,” says Jan SIGMA anatomical atlas of the rat brain. Whole-brain 3D atlas Oct 19, 2023 · The WHS rat brain atlas fills this gap, providing neuroscientists with a detailed volumetric open-source reference atlas, covering all major systems of the brain. Furthermore, dye calibration . High resolution MRI anatomical scans were collected in adult, male rats and used as the basis for making tracings on each slice. mouse reference atlas at 10, 25, 50 and 100 micron resolutions. Upper panel: A Nissl-stained tissue section is shown on the left, with a drawing (map) of corresponding gray matter regions, white matter tracts, ventricles (blue), and surface features on the right. 2014. The is based on high resolution isotropic ex vivo T2* weighted MRI and DTI data, acquired at the Duke Center for In Vivo Microscopy at resolutions of 39 μm and 78 μm, respectively. LIST OF ABBREVIATIONS (with structure-->plate assignments) May 29, 2020 · The Rat Brain in Stereotaxic Coordinates, Compact Third Edition provides student-friendly, coronal section diagrams of the most widely used mammalian in neuroscience. Fukomys anselli. 2021. 3D version of the Allen mouse spinal cord atlas at 20 x 10 x 10 micron resolution. The 2D coronal reference atlas is annotated on Nissl sections from a 34-year-old female based on a modified Brodmann nomenclature. Representative atlas levels and distances from bregma for each analyzed May 1, 2013 · Highlights We present the first magnetic resonance histology atlas of the developing rat brain. DOI: 10. The Rat Brain Atlas has been developed to analyze preclinical imaging data (MRI, PET, SPECT and CT) along with a GUI that facilitates registration and segmentation. ing brain parts among mammals as a class, based on the taxonomic principal of a common body plan shared by mammals. It is time consuming to manually extract brain tissue images during data preprocessing. 3. The use of the single brain allows for greater consistency between Mar 31, 2016 · A digital rat brain atlas, in PDF format, was derived from high-resolution in situ MRI images. Since its first edition in 1982, the Paxinos and Watson rat brain atlas has become the most trusted source of accurate coordinates and anatomical information in laboratories throughout the world. View PDF. Download; Download Atlas Image 15 pcw, Whole Brain; Neuroanatomical Guides; Human Brain Atlas Guide Aug 15, 2014 · Abstract. In order to minimize segmentation inaccuracies, when mapping a Description. Sep 21, 2023 · A stereotaxic MRI template set for the rat brain with tissue class distribution maps and co-registered anatomical atlas: application to pharmacological MRI. The Allen mouse brain atlas is a comprehensive digital resource that provides detailed information on the structure and function of the mouse brain. All drugs Oct 2, 2023 · a, A 3D rendering of the WHS rat brain atlas. , 2007) and neurological diseases such as Alzheimer's disease and epilepsy (Braak and Braak, 1991, Schwarcz and Witter, 2002). 4 : Automated quantitative analysis with atlas-defined regions of interest. BrainMaps. In 2011, the reference atlas was updated to enable interactive online exploration of the atlas and to provide a deeper level of 3-D annotation for informatics The Waxholm Rat atlas is an open access volumetric atlas of the Sprague Dawley rat brain. Nov 15, 2021 · The first three-dimensional (3D) MR atlas of the rat brain was published in 1987 with spatial resolution of 115 × 115 × 1200 um (voxel volume of 0. It provides spatial context for gene expression in the Allen Human Brain Atlas and the BrainSpan Atlas of the Developing Human Brain. The brain atlases developed in the HBP are openly available through the EBRAINS research infrastructure, and include detailed atlases of the human brain and the rat brain, as well as a new atlas of the macaque brain. Download scientific diagram | -Rat: H&E. 04. For 2009 The population-averaged 3D DTI atlas of the normal adult Sprague Dawley rat brain has been developed by Jelle Veraart under supervision of Jan Sijbers from the iMinds-Vision Lab at the University of Antwerp. established a pipeline for 3-D reconstruction of structures from two of. 16–18). The subregions are color coded. The material presented is based upon current acceptance of nomenclature and presents thoroughly revised delineations meticulously placed for the researcher's convenience. The origin is defined as "Junction of the rostral and dorsal tangential planes of the anterior commissure with the mid-sagittal plane Sep 26, 2018 · A behavioral atlas of the rat brain by Thompson, Robert, 1927-Publication date 1978 Topics Brain -- Atlases, Brain -- Localization of functions, Rats DOWNLOAD OPTIONS The atlas will also include a CD-ROM featuring all of the graphics and text. The June 2018 release is out. 2 mm from midsagital reference to lateral May 5, 2014 · Stereotaxic atlas of the infant rat brain at postnatal days 7–13. , 2014; Kjonigsen et al. Atlas of the adult rat brain. The images depict transverse, sagittal, and horizontal views in contiguous 0. Access Online via Elsevier, 2006. 2019). The 73 Atlas Levels (Supporting Information Folder 2) represent a moderate sampling frequency where virtually every gray matter Jul 25, 2022 · The present study was undertaken to refine the atlas of infant rats. Apr 4, 2018 · 3. 8, PMOD Technologies LLC) as described by Balsara rat brain. Acute stroke: speech arrest. A new atlas available: Adult Wistar rat brain template by Calabrese et al. The atlas was developed using Pydpiper image registration pipeline to create an average brain image of 41 Aug 12, 2022 · The present study was undertaken to refine the atlas of infant rats. e. Example images from the obtained probabilistic tractographic atlas. Spatial Normalization Apr 24, 2020 · As rat brain development is completed by three months of age 33, this tool can be reliably used on most adult Fischer 344 MR images. Seven transverse sections depicting neuroanatomical subsites. Fig. Using a common interactive file format enables users to customize the images for Fig. Three-dimensional digital brain atlases represent an important new generation of neuroinformatics tools for understanding complex brain anatomy, assigning location to experimental data, and planning of experiments. A wide range of structural and functional experimental data mapped to the Allen mouse brain atlas are shared via the EBRAINS research infrastructure. First, the spatial resolution at 25 m is considerably higher than previous data published Nov 11, 2021 · Abstract. Each slice was indexed to the skull surface as well as the skull landmarks Bregma and Lambda. 106 coronal sections at 0. Dotted lines indicate the position of cuts shown in b–d. The 73 Atlas Levels (Supporting Information Folder 2) represent a moderate sampling frequency where virtually every gray matter For rat data, the most detailed open-access 3D atlas is the Waxholm Space atlas of the Sprague Dawley rat brain (WHS rat brain atlas; RRID SCR_017124) (refs. The specimen is an 80 day old male Sprague Dawley rat. (2013), September 2013: New dataset available: the Cortical structures from The Marmoset Brain in Stereotactic Coordinates atlas. 001 Dec 23, 2015 · The series of atlases of the developing rat brain in stereotaxic coordinates that we propose here has been conceived as a tool for the exploration of the rat brain in vivo during the postnatal period, offering a choice of bregma and lambda as the reference points. 4 and H: 4. Mouse Brain Atlas. Academic Press, Oct 24, 2013 - Science - 472 pages. Franklin. The atlas comprises 9 postnatal time points, 8 contrasts and 26 labeled structures. License: Creative Commons Attribution-NonCommercial-ShareAlike ( CC BY-NC-SA 4. In 2021, we launched the Allen Institute for Neural Dynamics, a neuroscience division Oct 24, 2013 · The Rat Brain in Stereotaxic Coordinates. The series of atlases of the developing rat brain in stereotaxic coordinates that we propose here 1, 2 has been conceived as a tool for the exploration of the rat brain in vivo during the postnatal period, offering a choice of bregma and lambda as The Allen Mouse Brain Atlas includes a full-color, high-resolution anatomic reference atlas accompanied by a systematic, hierarchically organized taxonomy of mouse brain structures. NeuroImage 97, 374-386. It is suitable for brains of 250-350 g male and female rats and represents all areas of the brain and spinal cord. 2018-05: After 9 years of operation, ran broken link detector on the Scalable Brain Atlas ecosystem and fixed 40 issues. A tool by Matt Gaidica Jan 17, 2018 · 3. Electronic sharing and interactive use are benefits afforded by a digital format, but the foremost advantage of this 3D map is its whole brain integrated representation of rat in situ neuroanatomy. Anatomy of rat's CNS An atlas of the brain defines the shape and location of brain regions in a common coordinate space. 1016/j. As such, we established a stereotaxic atlas of the infant rat’s brain at postnatal days 7–13. First, the spatial resolution at 25µm is considerably higher than previous data published. (A–H) Atlas representations of four major brain regions visualized as solid, color coded 3-D Apr 8, 2014 · The WHS rat brain atlas is an open access, volumetric, brain atlas with segmentations of the Sprague Dawley rat brain (80 days old, male) described in detail in (26) (27) (28), provided through an Dec 22, 2015 · Front. Each atlas contains a series of microphotographs of wet, non-stained 200 micron Oct 2, 2023 · Volumetric brain atlases are increasingly used to integrate and analyze diverse experimental neuroscience data acquired from animal models, but until recently a publicly available digital atlas with complete coverage of the rat brain has been missing. 0 (Supporting Information Folder 2). Apr 24, 2020 · This paper reports the development of a high-resolution 3-D MRI atlas of the Fischer 344 adult rat brain. Purchase Chemoarchitectonic Atlas of the Rat Brain - 3rd Edition. SIGMA allows both linear and non-linear coregistration of multimodal acquisitions for accurate identification of The Waxholm Space rat brain atlas is a detailed volumetric atlas of the rat brain, to which a wide range of anatomical and functional data have been registered, including detailed data showing cellular distributions, axonal pathways, and gene expression patterns. It contains 56 plates stained with Nissl or Klüver-Barrera protocols and 375 labelled brain regions. The hippocampal formation and adjacent parahippocampal areas, together constituting the hippocampal region, are intensively investigated in the rat brain in the context of understanding memory and learning processes (Eichenbaum et al. Atlas parcellation is little changed from the preceding edition, but the nomenclature for rat is now aligned with an emerging panmammalian neuroanatomical nomenclature. 3 : Examples showing use of the WHS rat brain atlas. Jan 30, 2012 · The atlas contains 624 carefully delineated brain structures based on the newest (2005) edition of rat brain atlas by Paxinos and Watson. We analyzed regional growth and variability throughout postnatal development. Anatomy and Embryology. Scroll down to browse through the atlas online. 9 mm) 31 and a hole was then drilled above the dmPAG column. Based on the PET images, volume of interest was identified with the guidance of the Schiffer rat brain atlas 25 provided in the PMOD software (V 3. the seminal high-resolution standard atlases Apr 15, 2018 · The third new feature is a completely revised Atlas of the rat brain in spatially aligned transverse sections that can serve as a framework for 3-D modeling. View Show abstract An atlas of the brain defines the shape and location of brain regions in a common coordinate space. The atlas is a quantitative database for studying developmental neuropathology. This book is also available in a softcover spiral binding at the same price. neuroimage. Aug 18, 2021 · The new atlas was constructed based on the live magnetic resonance (MR) images of seven brains of Lister hooded rats, one of the main rat strains used in the UK for studies of the brain mechanisms of cognition and behaviour in health and disorder. This Fifth Edition is the result of years of research providing the user with the drawings of the completely new set of coronal sections, now from one rat, and with significantly improved resolution by adding a third additional section level as compared to earlier editions. The rat brain in stereotaxic coordinates: hard cover edition. The coordinates of this template are the Paxinos coordinates. Be Rat Brain Atlas. The latest edition of the Paxinos and Watson atlas offers a comprehensive and accurate stereotaxic system and fine delineation of sub-structure boundaries in all three cardinal planes, in Our team is interested in the neuronal network activity expressed in the brain at the early developmental stages. Every lab working with the rat as an experimental animal model will want to use this book as their atlas of choice. 4 mm intervals The Rat Brain Atlas has been developed to analyze preclinical imaging data (MRI, PET, SPECT and CT) along with a GUI that facilitates registration and segmentation. Brain atlases. Schiffer [1] is available. Gubra’s LSFM mouse brain atlas at 20 micron resolution. Adult male Sprague-Dawley rates (250-300g, age 52-62 days). Acute stroke: speaks nonsense words, "fluent aphasia" (time-lapse movies) Acute stroke: writes, but can't read, "alexia without agraphia". , 2019), as well as the processing pipeline for atlas-based imaging data in the mouse Nov 18, 2021 · A chemoarchitectonic atlas of the rat brain, featuring a complete brain in serial sections labelled with 8 stains in sequence: Nissl, SMI32, NADPH diaphorase, tyrosine hydroxylase, parvalbumin No promo code needed. Neuroanat. The (C) A custom generated transparent atlas overlay from the 3-D Waxholm Space atlas of the rat brain (v2, Papp et al. Three-dimensional computerised atlas of the rat brain stem precerebellar system: approaches for mapping, visualization, and comparison of spatial distribution data. Anatomical brain atlas of the Ansell's mole-rat. , 23 December 2015. b, A horizontal cut through the dorsal part of the atlas, highlighting cortical and Dec 26, 2017 · Identification of regions and borders for analysis were determined based on the Swanson rat brain atlas (Swanson 2018). Dec 23, 2015 · For the adult rats, a craniotomy was performed over the left cortex above the inferior colliculus (AP: 8. Tissue sections were examined under an 100× objective lens in a light microscope (Olympus BX51, Japan) connected to a Jan 30, 2012 · The atlas contains 624 carefully delineated brain structures based on the newest (2005) edition of rat brain atlas by Paxinos and Watson. 2. In particular, we are interested in the generation of the patterns of activity in the sensory (somatosensory and visual) cortices, with the aim to understand the neuronal network mechanisms of the earliest pattern, so-called spindle-burst, and its roles in the activity-dependent Aug 1, 2021 · The Waxholm Space (WHS) atlas of the Sprague Dawley rat brain (Papp et al. vf ws sn fq hi ol dm wf bl um